PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016500088.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 345aa    MW: 39351.6 Da    PI: 6.5633
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016500088.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-05182201120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_016500088.1 182 FSCPLCFKTFNRYNNMQMHM 201
                     89*****************9 PP

2zf-C2H214.69.8e-05266288123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  XP_016500088.1 266 FMCRKCGKAFAVRGDWRTHEKNC 288
                     89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.9E-5182201IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66182209IPR007087Zinc finger, C2H2
SMARTSM003550.61182204IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280184204IPR007087Zinc finger, C2H2
SuperFamilySSF576671.56E-6248286No hitNo description
Gene3DG3DSA:3.30.160.609.2E-6262286IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808266286IPR007087Zinc finger, C2H2
SMARTSM0035549266286IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSDPYTNYFH GWFNNLNPLY HFSSSSSSST SYNYVLPSTN FQYNEYFQTS PPSPPLKEPL  60
PLLSLSPTIR QIQYQDYSSN STTMEVDNTN NSKENKEESF ISNFGDEDQE DDESVSVALQ  120
LGLPNPSPEL ISRISTTNTI EETNKEDQDV TFANGYSTTG TLHKGQYWIP TPAQILIGPT  180
QFSCPLCFKT FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TAMLRLPCFC CAPGCRNNID  240
HPRAKPLKDF RTLQTHYKRK HGIKPFMCRK CGKAFAVRGD WRTHEKNCGK LWYCTCGSDF  300
KHKRSLKDHI KAFGNGHAAY GIDSLEEEDE PASEIEQDND HDPSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-171HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBankHG9755231e-171HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016500088.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-143ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLM1B2851e-173M1B285_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000354081e-173(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-135C2H2 family protein